About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33071092_33073917_F

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
33071092 - 33073917
Intron Length:
2826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
ATGTGGTGAAGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTATTATATTT
Flanking Amino Acid:
KDKPEVGSKKKELEKTAKES
Intron Amino Acid Position:
520

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
73.8
33
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
44
-0.3
1.7
43
46.1
Minor 5ss
35.8
-1.6
2.8
40.4
40
Minor BPS
48.7
-0
1.8
72.79
38.7

Associated Gene:

Gene:
PSIP1
Ensembl Gene ID:
ENSAPLG00000011966
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012465
33038923 - 33073963
35041