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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33082816_33084575_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33082816 - 33084575
Intron Length:
1760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTAACTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TGTTTTGTAACT
Flanking Amino Acid:
KCFVCKMYTARWVTNNDSLA
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71
35.7
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
77.6
0.62
0.9
70.7
39.8
Minor 5ss
50.9
0.03
2.4
66.9
44.7
Minor BPS
63.2
0.49
2
83.79
37.4

Associated Gene:

Gene:
SNAPC3
Ensembl Gene ID:
ENSAPLG00000024309
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019458
33079622 - 33102898
23277