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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33085898_33087123_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33085898 - 33087123
Intron Length:
1226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGCAT
5'SS Class:
major
3'SS Sequence:
TTTCTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
ACCTTTCTATTT
Flanking Amino Acid:
KRYPECRDLSRTVIEWSEAH
Intron Amino Acid Position:
252

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
63.1
42.9
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
90.8
0.92
0.7
89
26.5
Minor 5ss
30.7
-2.2
3.6
46.8
48.5
Minor BPS
44.7
-0.3
1.8
57.49
40.5

Associated Gene:

Gene:
SNAPC3
Ensembl Gene ID:
ENSAPLG00000024309
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019458
33079622 - 33102898
23277