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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33087207_33092301_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33087207 - 33092301
Intron Length:
5095

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
TATCTTGTAACA
Flanking Amino Acid:
PDQAPEHISKDLYKSAFFYF
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
71.4
38.4
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
88.6
0.87
0.6
87.8
22.3
Minor 5ss
34
-1.8
3.3
49.1
46.6
Minor BPS
53.9
0.12
2
69.28
37

Associated Gene:

Gene:
SNAPC3
Ensembl Gene ID:
ENSAPLG00000024309
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019458
33079622 - 33102898
23277