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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33125952_33148237_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33125952 - 33148237
Intron Length:
22286

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTAATTAAAA
Flanking Amino Acid:
NGAEENGGEEENFEDAFENI
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.9
79.3
32.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
95
1.01
0.6
88.4
28.7
Minor 5ss
17.2
-3.8
3.5
23.1
37.4
Minor BPS
58.3
0.26
1.9
74.02
36.5

Associated Gene:

Gene:
TTC39B
Ensembl Gene ID:
ENSAPLG00000012421
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032952
33125828 - 33200526
74699