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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_3314200_3340976_F

Intron Information:

Intron Rank:
126916
Intron Class:
major
Intron Phase:
Intron Coordinates:
3314200 - 3340976
Intron Length:
26777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTATTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
GTGTCCTGACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25.9
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
78.9
0.65
0.8
73.3
35.9
Minor 5ss
41.5
-0.9
2.7
53.7
43.5
Minor BPS
51.4
0.12
1.9
71.17
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018375
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046550
3313444 - 3343632
30189
ENSAPLT00000018669
3313444 - 3343632
30189