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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33178802_33180816_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33178802 - 33180816
Intron Length:
2015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
TTTTGTATAATC
Flanking Amino Acid:
LQKAALTFVQDENMINFIKG
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
67.7
37.5
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
93.1
0.97
0.7
92.3
26.6
Minor 5ss
31.6
-2.1
3.1
40.3
45.3
Minor BPS
56.9
0.2
2
74.78
36.3

Associated Gene:

Gene:
TTC39B
Ensembl Gene ID:
ENSAPLG00000012421
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035501
33130273 - 33200526
70254
ENSAPLT00000032952
33125828 - 33200526
74699
ENSAPLT00000012969
33158501 - 33200526
42026