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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33182634_33184045_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33182634 - 33184045
Intron Length:
1412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGGGAT
5'SS Class:
major
3'SS Sequence:
TATTTTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCATAATTAATT
Flanking Amino Acid:
LEFIGFSGNRELGLHQLQEG
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
65.7
40.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
85
0.79
0.7
85.1
29.3
Minor 5ss
36.5
-1.5
3.6
46
49.2
Minor BPS
58.7
0.35
1.8
75.18
41.4

Associated Gene:

Gene:
TTC39B
Ensembl Gene ID:
ENSAPLG00000012421
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035501
33130273 - 33200526
70254
ENSAPLT00000032952
33125828 - 33200526
74699
ENSAPLT00000012969
33158501 - 33200526
42026