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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33184155_33184938_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33184155 - 33184938
Intron Length:
784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TTGTGATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTATTGTGATT
Flanking Amino Acid:
VYHTYVSLILGTGDTNLEEA
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.6
37.6
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
75
0.56
0.9
66.7
44.2
Minor 5ss
30.2
-2.3
2.8
34
35
Minor BPS
49.2
0.02
2
74.35
37.2

Associated Gene:

Gene:
TTC39B
Ensembl Gene ID:
ENSAPLG00000012421
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035501
33130273 - 33200526
70254
ENSAPLT00000032952
33125828 - 33200526
74699
ENSAPLT00000012969
33158501 - 33200526
42026