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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33185007_33185093_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33185007 - 33185093
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGTGTATT
5'SS Class:
major
3'SS Sequence:
CTTTCCTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAC
U12 Branch Point Sequence:
TTTCCTTTCAAG
Flanking Amino Acid:
LEPYLQKFPNGSIILFYAAR
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
81.6
31.2
Major BPS
66.7
0.42
1.2
67.6
36.5
Major PPT
77
0.61
1
75.3
33.5
Minor 5ss
44.7
-0.6
2.8
64
40.7
Minor BPS
53.2
-0
2
65.96
41.8

Associated Gene:

Gene:
TTC39B
Ensembl Gene ID:
ENSAPLG00000012421
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012969
33158501 - 33200526
42026
ENSAPLT00000035501
33130273 - 33200526
70254
ENSAPLT00000032952
33125828 - 33200526
74699