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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33185154_33185475_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33185154 - 33185475
Intron Length:
322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTAAATCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTATTCTTACTT
Flanking Amino Acid:
IDILKGNFEKAQLTFQECIA
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
76.5
34.2
Major BPS
100
1.24
0.5
100
0
Major PPT
68
0.41
0.9
59.6
40.4
Minor 5ss
32.9
-2
3
40.7
45.5
Minor BPS
69.6
0.69
1.5
84.08
37.1

Associated Gene:

Gene:
TTC39B
Ensembl Gene ID:
ENSAPLG00000012421
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035501
33130273 - 33200526
70254
ENSAPLT00000032952
33125828 - 33200526
74699
ENSAPLT00000012969
33158501 - 33200526
42026