Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33186758_33187156_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

33186758 - 33187156

Intron Length:

399

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAACATT

5'SS Class:

strong_major

3'SS Sequence:

TGTCTCCTTTTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATCCAT

U12 Branch Point Sequence:

ATAAAGTGAACT

Flanking Amino Acid:

KTGEDIVSLFRQVEGLKQRI

Intron Amino Acid Position:

419

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

0.9

84.2

33.9

Major BPS

69.5

0.49

1.2

78.7

34.9

Major PPT

80.2

0.68

0.8

77.9

30.9

Minor 5ss

44.7

-0.6

3.1

45.2

Minor BPS

45.1

-0.3

2.3

66.58

43.1

Associated Gene:

Gene:

TTC39B

Ensembl Gene ID:

ENSAPLG00000012421

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035501

33130273 - 33200526

70254

ENSAPLT00000032952

33125828 - 33200526

74699

ENSAPLT00000012969

33158501 - 33200526

42026