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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33187278_33189693_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33187278 - 33189693
Intron Length:
2416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACTTGCT
5'SS Class:
major
3'SS Sequence:
GCTTTTTTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATGCAATT
Flanking Amino Acid:
QPVKLILPALEMMYVWNGFA
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.1
64.5
39.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.9
0.67
1
80.2
37.3
Minor 5ss
34.5
-1.8
3.4
47.8
43
Minor BPS
46.3
-0.2
2.2
71.33
40.1

Associated Gene:

Gene:
TTC39B
Ensembl Gene ID:
ENSAPLG00000012421
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012969
33158501 - 33200526
42026
ENSAPLT00000035501
33130273 - 33200526
70254
ENSAPLT00000032952
33125828 - 33200526
74699