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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33194176_33199205_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33194176 - 33199205
Intron Length:
5030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TATGATTTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTCTTTATTT
Flanking Amino Acid:
AELCFNQVIQSEKQIKYDSY
Intron Amino Acid Position:
536

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
89.9
22.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
70.5
0.46
0.9
62.3
43.7
Minor 5ss
37.1
-1.5
3
48.8
46.9
Minor BPS
69.3
0.68
1.6
83.14
39

Associated Gene:

Gene:
TTC39B
Ensembl Gene ID:
ENSAPLG00000012421
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012969
33158501 - 33200526
42026
ENSAPLT00000035501
33130273 - 33200526
70254
ENSAPLT00000032952
33125828 - 33200526
74699