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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33284628_33285223_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33284628 - 33285223
Intron Length:
596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CTATCACCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TGAAGCATAATT
Flanking Amino Acid:
DEDMVMLRLYRFTETETFVE
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
74
0.54
0.9
66.9
34.1
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
47.9
-0
2
67.65
42.8

Associated Gene:

Gene:
FREM1
Ensembl Gene ID:
ENSAPLG00000012801
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013363
33268989 - 33333396
64408
ENSAPLT00000045918
33268989 - 33333396
64408
ENSAPLT00000041062
33268989 - 33333396
64408