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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33292446_33292979_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33292446 - 33292979
Intron Length:
534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGACAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATTTTACCAACT
Flanking Amino Acid:
HDPPNLSEPQVMMVQIIPVD
Intron Amino Acid Position:
627

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
66.2
39.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
74.7
0.56
0.9
66.3
39.5
Minor 5ss
31.2
-2.2
3.3
41.8
45
Minor BPS
48.9
-0
2.1
76.75
39.1

Associated Gene:

Gene:
FREM1
Ensembl Gene ID:
ENSAPLG00000012801
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045918
33268989 - 33333396
64408
ENSAPLT00000041062
33268989 - 33333396
64408
ENSAPLT00000013363
33268989 - 33333396
64408