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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33294462_33295686_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33294462 - 33295686
Intron Length:
1225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTAT
5'SS Class:
major
3'SS Sequence:
TCACTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
ATCTTCTTACAT
Flanking Amino Acid:
AVLALRSFTQHAVNYMKVAY
Intron Amino Acid Position:
723

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
77.8
32.5
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
84.8
0.78
0.8
80.1
31.6
Minor 5ss
44.3
-0.6
2.5
58.6
46
Minor BPS
58.7
0.35
1.7
74.89
42

Associated Gene:

Gene:
FREM1
Ensembl Gene ID:
ENSAPLG00000012801
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013363
33268989 - 33333396
64408
ENSAPLT00000045918
33268989 - 33333396
64408
ENSAPLT00000041062
33268989 - 33333396
64408