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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33295855_33296321_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33295855 - 33296321
Intron Length:
467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGTGA
5'SS Class:
major
3'SS Sequence:
CTCCTCCATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAGCAT
U12 Branch Point Sequence:
TATCAGTTAAGC
Flanking Amino Acid:
ILPVDNQAPEVFTSHLTVEE
Intron Amino Acid Position:
779

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
66.6
41.6
Major BPS
55.5
0.14
1.4
66
40.9
Major PPT
70.7
0.47
0.8
65.3
29.5
Minor 5ss
34.7
-1.7
3.5
46.6
48.7
Minor BPS
45.8
-0.3
2.4
62.15
42.7

Associated Gene:

Gene:
FREM1
Ensembl Gene ID:
ENSAPLG00000012801
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045918
33268989 - 33333396
64408
ENSAPLT00000041062
33268989 - 33333396
64408
ENSAPLT00000013363
33268989 - 33333396
64408