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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33304082_33304942_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33304082 - 33304942
Intron Length:
861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTGCA
5'SS Class:
major
3'SS Sequence:
CCCCACTCTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAC
U12 Branch Point Sequence:
CCCCCCCCCACT
Flanking Amino Acid:
HEFSMDLLKNGMKLMYMHDN
Intron Amino Acid Position:
1232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
67.7
37.6
Major BPS
45
-0.3
1.2
49.7
35.3
Major PPT
67.6
0.4
0.8
60.5
29.2
Minor 5ss
31.7
-2.1
3.3
37.8
42.2
Minor BPS
40.8
-0.6
2.2
53.97
47.1

Associated Gene:

Gene:
FREM1
Ensembl Gene ID:
ENSAPLG00000012801
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045918
33268989 - 33333396
64408
ENSAPLT00000041062
33268989 - 33333396
64408
ENSAPLT00000013363
33268989 - 33333396
64408