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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33316349_33316907_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33316349 - 33316907
Intron Length:
559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTACTGTAT
5'SS Class:
major
3'SS Sequence:
CTTTCTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTTACTTTAACT
Flanking Amino Acid:
RYGYLENVTSGGFIHEGFSQ
Intron Amino Acid Position:
1687

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.1
0.29
1.2
59.6
41.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
86.8
0.83
0.7
80.1
31.9
Minor 5ss
37
-1.5
3.5
46.5
48.8
Minor BPS
79
0.99
1.2
88.46
36.7

Associated Gene:

Gene:
FREM1
Ensembl Gene ID:
ENSAPLG00000012801
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041062
33268989 - 33333396
64408
ENSAPLT00000013363
33268989 - 33333396
64408
ENSAPLT00000045918
33268989 - 33333396
64408