About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33323636_33324359_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33323636 - 33324359
Intron Length:
724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGACAC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TGCTATTGTACT
Flanking Amino Acid:
RLRVIGNRRIVHPSSVFRNG
Intron Amino Acid Position:
1933

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1
61.5
37.4
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
100
1.12
0.4
100
0
Minor 5ss
34.1
-1.8
3.2
44.4
38.2
Minor BPS
46.8
-0.1
2
66.46
43.8

Associated Gene:

Gene:
FREM1
Ensembl Gene ID:
ENSAPLG00000012801
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041062
33268989 - 33333396
64408
ENSAPLT00000013363
33268989 - 33333396
64408
ENSAPLT00000045918
33268989 - 33333396
64408