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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33324408_33325158_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33324408 - 33325158
Intron Length:
751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTCCCTTCAAAT
Flanking Amino Acid:
FRNGTDVFFKDFNSFPKACT
Intron Amino Acid Position:
1949

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
81.8
29.7
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
87.3
0.84
0.7
80
32
Minor 5ss
39.7
-1.1
3.1
53.3
37.6
Minor BPS
57.4
0.31
1.7
75.04
41.5

Associated Gene:

Gene:
FREM1
Ensembl Gene ID:
ENSAPLG00000012801
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045918
33268989 - 33333396
64408