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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33344227_33345701_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33344227 - 33345701
Intron Length:
1475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TGATCTTCAAAC
Flanking Amino Acid:
ETCRTLPFSQGIAHESCEKV
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
89.9
0.9
0.7
88.4
28.7
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
57
0.2
1.6
65.98
39

Associated Gene:

Gene:
CER1
Ensembl Gene ID:
ENSAPLG00000013182
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013724
33343699 - 33345995
2297