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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33353457_33355594_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
33353457 - 33355594
Intron Length:
2138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
CTCTGTTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
67.3
44.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
83.6
0.75
0.8
81.4
34.9
Minor 5ss
31
-2.2
3.3
40.6
45.6
Minor BPS
48.6
-0
2
66.47
45.5

Associated Gene:

Gene:
ZDHHC21
Ensembl Gene ID:
ENSAPLG00000013190
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013731
33353311 - 33392752
39442