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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33355707_33359891_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
33355707 - 33359891
Intron Length:
4185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTTT
5'SS Class:
strong_major
3'SS Sequence:
ATTATCTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTGTTATTATCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
81.2
33.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
75.7
0.58
0.9
67.3
39.6
Minor 5ss
48.8
-0.1
3.1
72.7
44.5
Minor BPS
59.8
0.38
1.9
80.59
41.3

Associated Gene:

Gene:
ZDHHC21
Ensembl Gene ID:
ENSAPLG00000013190
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013731
33353311 - 33392752
39442