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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33366508_33368118_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33366508 - 33368118
Intron Length:
1611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CTATATTTACTT
Flanking Amino Acid:
CVRRMDHHCPWINNCVGEDN
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.5
37.2
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
92.4
0.95
0.7
88.3
28.9
Minor 5ss
35.7
-1.6
3.2
45.3
43.7
Minor BPS
51.2
0.12
1.8
69.08
42.5

Associated Gene:

Gene:
ZDHHC21
Ensembl Gene ID:
ENSAPLG00000013190
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025636
33357821 - 33392793
34973
ENSAPLT00000013731
33353311 - 33392752
39442