About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_3341080_3341792_F

Intron Information:

Intron Rank:
126919
Intron Class:
major
Intron Phase:
Intron Coordinates:
3341080 - 3341792
Intron Length:
713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
GTATGTTATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CCTCACTCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
67.8
0.4
1
62.1
43.5
Minor 5ss
33
-1.9
3.2
42.9
44.7
Minor BPS
49.9
0.07
1.8
66.59
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018375
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046550
3313444 - 3343632
30189