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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33518210_33524254_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33518210 - 33524254
Intron Length:
6045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGACG
5'SS Class:
major
3'SS Sequence:
CTTCTCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTCCAC
U12 Branch Point Sequence:
TTTCCCTCCACT
Flanking Amino Acid:
MMYSPICLTQDEFHPFIEAL
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1
62
42.2
Major BPS
47
-0.1
1.3
55.7
39.5
Major PPT
84.3
0.77
0.7
79.3
26.3
Minor 5ss
38
-1.4
3.1
49
47
Minor BPS
62.7
0.48
2
86.08
39.7

Associated Gene:

Gene:
NFIB
Ensembl Gene ID:
ENSAPLG00000013233
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038289
33518180 - 33699769
181590
ENSAPLT00000034501
33518180 - 33699657
181478
ENSAPLT00000013809
33518180 - 33699813
181634
ENSAPLT00000042879
33518180 - 33699769
181590