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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33524787_33621601_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33524787 - 33621601
Intron Length:
96815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAGC
5'SS Class:
strong_major
3'SS Sequence:
GATTTCTTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
ATTTCTTTGATT
Flanking Amino Acid:
LFLAYYVQEQDSGQPGSPSH
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
69.9
41.1
Major BPS
84
0.85
0.9
75
39.9
Major PPT
79.1
0.65
0.8
73.2
37
Minor 5ss
32.4
-2
3.2
43.2
44
Minor BPS
79
1
1
88.92
28.9

Associated Gene:

Gene:
NFIB
Ensembl Gene ID:
ENSAPLG00000013233
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037247
33523830 - 33699769
175940
ENSAPLT00000034501
33518180 - 33699657
181478
ENSAPLT00000013809
33518180 - 33699813
181634
ENSAPLT00000042879
33518180 - 33699769
181590
ENSAPLT00000038289
33518180 - 33699769
181590