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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33641608_33644487_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33641608 - 33644487
Intron Length:
2880

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAC
5'SS Class:
strong_major
3'SS Sequence:
CATTACTTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
CATTACTTAACA
Flanking Amino Acid:
LQRSLSSPPSSKRPKTISID
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
77.5
30.5
Major BPS
79.4
0.73
1
80.1
32
Major PPT
71.7
0.49
1
66
39.1
Minor 5ss
33.1
-1.9
3
42.8
44.4
Minor BPS
73.4
0.73
1.5
77.82
38.5

Associated Gene:

Gene:
NFIB
Ensembl Gene ID:
ENSAPLG00000013233
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013809
33518180 - 33699813
181634
ENSAPLT00000042879
33518180 - 33699769
181590
ENSAPLT00000038289
33518180 - 33699769
181590
ENSAPLT00000037247
33523830 - 33699769
175940
ENSAPLT00000034501
33518180 - 33699657
181478