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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33678356_33699639_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33678356 - 33699639
Intron Length:
21284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCAAG
5'SS Class:
major
3'SS Sequence:
CCCTTTCCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTCTATCT
Flanking Amino Acid:
RDPSFLHQQQSWYLG*
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
64.9
42.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
73.5
0.53
0.8
69.1
30.1
Minor 5ss
31.9
-2.1
3.1
38.2
47
Minor BPS
64.7
0.54
1.9
88.58
36.4

Associated Gene:

Gene:
NFIB
Ensembl Gene ID:
ENSAPLG00000013233
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034501
33518180 - 33699657
181478