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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33687484_33699639_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33687484 - 33699639
Intron Length:
12156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACATTT
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTCCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTCTATCT
Flanking Amino Acid:
SEDTLGITWQSPGTWASLVP
Intron Amino Acid Position:
527

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1.1
81.6
33.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
73.5
0.53
0.8
69.1
30.1
Minor 5ss
49.4
-0
2.9
73.9
42.6
Minor BPS
64.7
0.54
1.9
88.58
36.4

Associated Gene:

Gene:
NFIB
Ensembl Gene ID:
ENSAPLG00000013233
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038289
33518180 - 33699769
181590
ENSAPLT00000037247
33523830 - 33699769
175940
ENSAPLT00000013809
33518180 - 33699813
181634
ENSAPLT00000042879
33518180 - 33699769
181590