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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33751642_33751840_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33751642 - 33751840
Intron Length:
199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCCAAC
U12 Branch Point Sequence:
GGTGCTCCAACG
Flanking Amino Acid:
RMGQERQEQKVLLEQYLPEV
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1.2
75.8
34.3
Major BPS
49.8
-0
1.2
60
34.3
Major PPT
90.4
0.91
0.6
88.5
21
Minor 5ss
28.4
-2.5
3
34.8
41.6
Minor BPS
44.3
-0.5
2
49.97
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018925
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023300
33748378 - 33753255
4878