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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33780925_33784161_R

Intron Information:

Intron Rank:
135282
Intron Class:
major
Intron Phase:
Intron Coordinates:
33780925 - 33784161
Intron Length:
3237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTATCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.9
38.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85
0.79
0.9
85.9
33
Minor 5ss
34.5
-1.8
3.3
49
47.2
Minor BPS
66.1
0.5
1.5
75.42
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020166
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028763
33780838 - 33785172
4335