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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33816402_33838189_F

Intron Information:

Intron Rank:
124996
Intron Class:
major
Intron Phase:
Intron Coordinates:
33816402 - 33838189
Intron Length:
21788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCTGA
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTTTTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
62.3
40.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
94
0.99
0.5
92.6
17.2
Minor 5ss
38.3
-1.3
3
47.2
48.2
Minor BPS
70.6
0.64
1.3
75.65
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017307
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037197
33812232 - 33838323
26092