Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33907236_33909260_F

Intron Information:

Intron Rank:

125194

Intron Class:

major

Intron Phase:

Intron Coordinates:

33907236 - 33909260

Intron Length:

2025

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGTTCT

5'SS Class:

strong_major

3'SS Sequence:

TTTTGCCCCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTGAT

U12 Branch Point Sequence:

TTGTGATGACTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

83.2

29.3

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

76.6

0.6

0.8

74.7

30.6

Minor 5ss

-0.8

2.8

56.6

41.9

Minor BPS

43.2

-0.4

2.2

65.6

45.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017414

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033418

33902425 - 33909359

6935