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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_3391584_3433726_F

Intron Information:

Intron Rank:
126905
Intron Class:
major
Intron Phase:
Intron Coordinates:
3391584 - 3433726
Intron Length:
42143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTGCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTTAT
U12 Branch Point Sequence:
TTATGCTTACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
75.9
34.8
Major BPS
72.5
0.56
1.2
63.4
44
Major PPT
83.2
0.75
0.8
84.8
30
Minor 5ss
38.3
-1.3
3.1
50.9
45.7
Minor BPS
56.9
0.21
2
71.78
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018361
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043996
3391479 - 3433925
42447