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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_339252_342950_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
339252 - 342950
Intron Length:
3699

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TCTTTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TTTTCCTCACCT
Flanking Amino Acid:
DQPCWEQDFMFEISRLDLGL
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
76.5
38.6
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
92.5
0.96
0.6
88.3
21.4
Minor 5ss
41.9
-0.9
2.8
57.5
41
Minor BPS
71.8
0.76
1.8
92.41
36.6

Associated Gene:

Gene:
UNC13B
Ensembl Gene ID:
ENSAPLG00000003655
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003123
161360 - 370186
208827
ENSAPLT00000003753
161360 - 353765
192406
ENSAPLT00000003128
161360 - 370186
208827