Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_34012783_34013680_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34012783 - 34013680

Intron Length:

898

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAACATG

5'SS Class:

strong_major

3'SS Sequence:

TTCTGCCAAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ACATTTTTAATA

Flanking Amino Acid:

FEQLVRSMSQGRLVETIELI

Intron Amino Acid Position:

136

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

75.1

41.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

67.7

0.4

62.9

37.6

Minor 5ss

42.3

-0.8

56.9

47.4

Minor BPS

65.7

0.49

1.1

65.51

35.4

Associated Gene:

Gene:

MPDZ

Ensembl Gene ID:

ENSAPLG00000013686

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020647

34003288 - 34097571

94284

ENSAPLT00000035705

34003288 - 34097571

94284

ENSAPLT00000014337

34003347 - 34097571

94225

ENSAPLT00000034187

34003288 - 34097571

94284

ENSAPLT00000045139

34003288 - 34097571

94284

ENSAPLT00000029758

34003288 - 34097571

94284

ENSAPLT00000044805

34003347 - 34097571

94225

ENSAPLT00000022916

34003347 - 34097571

94225

ENSAPLT00000038640

34003347 - 34097588

94242