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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_34013821_34015722_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
34013821 - 34015722
Intron Length:
1902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
ACATATGTGACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTTTGTCATCC
Flanking Amino Acid:
QEIQEGSVAHRDGKLKEADQ
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
81.2
32.8
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
59.3
0.21
1.1
53.4
45
Minor 5ss
37.5
-1.4
3.1
50.4
45.6
Minor BPS
47.5
-0.2
2.4
69.92
41.8

Associated Gene:

Gene:
MPDZ
Ensembl Gene ID:
ENSAPLG00000013686
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022916
34003347 - 34097571
94225
ENSAPLT00000038640
34003347 - 34097588
94242
ENSAPLT00000020647
34003288 - 34097571
94284
ENSAPLT00000035705
34003288 - 34097571
94284
ENSAPLT00000014337
34003347 - 34097571
94225
ENSAPLT00000034187
34003288 - 34097571
94284
ENSAPLT00000045139
34003288 - 34097571
94284
ENSAPLT00000029758
34003288 - 34097571
94284
ENSAPLT00000044805
34003347 - 34097571
94225