Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_34039007_34044518_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34039007 - 34044518

Intron Length:

5512

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACTTCT

5'SS Class:

strong_major

3'SS Sequence:

TTTACTCAATTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTCAA

U12 Branch Point Sequence:

TTTTACTCAATT

Flanking Amino Acid:

GLGFSILDYQDPVDPANTVI

Intron Amino Acid Position:

722

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

1.1

81.4

33.4

Major BPS

77.9

0.69

0.8

77.9

25.8

Major PPT

68.2

0.41

68.4

37.5

Minor 5ss

48.4

-0.1

2.5

68.6

42.1

Minor BPS

70.6

0.72

1.7

89.59

34.6

Associated Gene:

Gene:

MPDZ

Ensembl Gene ID:

ENSAPLG00000013686

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020647

34003288 - 34097571

94284

ENSAPLT00000035705

34003288 - 34097571

94284

ENSAPLT00000014337

34003347 - 34097571

94225

ENSAPLT00000034187

34003288 - 34097571

94284

ENSAPLT00000029758

34003288 - 34097571

94284

ENSAPLT00000044805

34003347 - 34097571

94225

ENSAPLT00000022916

34003347 - 34097571

94225

ENSAPLT00000038640

34003347 - 34097588

94242