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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_34049475_34053559_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34049475 - 34053559
Intron Length:
4085

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
CTGTTTTTAACA
Flanking Amino Acid:
SLSLPSSTPKAVGDEFLNVA
Intron Amino Acid Position:
884

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
80
0.75
1
78.6
31
Major PPT
80
0.68
0.9
76.7
36.2
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
72.6
0.7
1.2
74.03
38.5

Associated Gene:

Gene:
MPDZ
Ensembl Gene ID:
ENSAPLG00000013686
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020647
34003288 - 34097571
94284
ENSAPLT00000038640
34003347 - 34097588
94242
ENSAPLT00000014337
34003347 - 34097571
94225
ENSAPLT00000035705
34003288 - 34097571
94284
ENSAPLT00000034187
34003288 - 34097571
94284
ENSAPLT00000022916
34003347 - 34097571
94225