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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_34054802_34058199_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34054802 - 34058199
Intron Length:
3398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAGTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCACTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TAACTCTTACAT
Flanking Amino Acid:
ITIAKGNSSLGMTVSSNKDG
Intron Amino Acid Position:
1020

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.4
33.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
83.4
0.75
0.7
79.2
27.9
Minor 5ss
36.4
-1.5
3.4
49.2
47.3
Minor BPS
51.6
0.13
1.7
68.75
41.4

Associated Gene:

Gene:
MPDZ
Ensembl Gene ID:
ENSAPLG00000013686
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020647
34003288 - 34097571
94284
ENSAPLT00000035705
34003288 - 34097571
94284
ENSAPLT00000014337
34003347 - 34097571
94225
ENSAPLT00000034187
34003288 - 34097571
94284
ENSAPLT00000045139
34003288 - 34097571
94284
ENSAPLT00000029758
34003288 - 34097571
94284
ENSAPLT00000044805
34003347 - 34097571
94225
ENSAPLT00000022916
34003347 - 34097571
94225
ENSAPLT00000038640
34003347 - 34097588
94242