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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_34061402_34065638_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34061402 - 34065638
Intron Length:
4237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
CATTTTATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ACTACTTTAATC
Flanking Amino Acid:
APADDQALFYVITYVPAENL
Intron Amino Acid Position:
1100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.1
79.9
34.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.2
0.75
0.8
77.7
34.9
Minor 5ss
38.2
-1.3
3
52.2
44.4
Minor BPS
68
0.54
1.2
69.07
36.8

Associated Gene:

Gene:
MPDZ
Ensembl Gene ID:
ENSAPLG00000013686
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022916
34003347 - 34097571
94225
ENSAPLT00000044805
34003347 - 34097571
94225
ENSAPLT00000020647
34003288 - 34097571
94284
ENSAPLT00000035705
34003288 - 34097571
94284
ENSAPLT00000034187
34003288 - 34097571
94284
ENSAPLT00000029758
34003288 - 34097571
94284
ENSAPLT00000045139
34003288 - 34097571
94284