About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_34065744_34066544_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34065744 - 34066544
Intron Length:
801

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TCATGTTCATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTTTTTAAAT
Flanking Amino Acid:
PIELFPSHTVSREIPELPER
Intron Amino Acid Position:
1121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79.3
31.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.8
0.49
1
70.6
39.7
Minor 5ss
28.1
-2.5
2.7
31.6
42.6
Minor BPS
72.8
0.79
1.3
84.4
36.4

Associated Gene:

Gene:
MPDZ
Ensembl Gene ID:
ENSAPLG00000013686
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022916
34003347 - 34097571
94225
ENSAPLT00000038640
34003347 - 34097588
94242
ENSAPLT00000020647
34003288 - 34097571
94284
ENSAPLT00000035705
34003288 - 34097571
94284
ENSAPLT00000014337
34003347 - 34097571
94225
ENSAPLT00000034187
34003288 - 34097571
94284
ENSAPLT00000045139
34003288 - 34097571
94284
ENSAPLT00000029758
34003288 - 34097571
94284
ENSAPLT00000044805
34003347 - 34097571
94225