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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_34066641_34067124_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34066641 - 34067124
Intron Length:
484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCACAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAC
U12 Branch Point Sequence:
TTTGTCACAACA
Flanking Amino Acid:
ATFSNWNQPRKVELWREPSK
Intron Amino Acid Position:
1153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.9
30
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
72.7
0.51
1
67.7
37.7
Minor 5ss
34.7
-1.7
3.2
41.8
38.8
Minor BPS
52.8
0.08
1.9
72.2
39.8

Associated Gene:

Gene:
MPDZ
Ensembl Gene ID:
ENSAPLG00000013686
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020647
34003288 - 34097571
94284
ENSAPLT00000035705
34003288 - 34097571
94284
ENSAPLT00000014337
34003347 - 34097571
94225
ENSAPLT00000034187
34003288 - 34097571
94284
ENSAPLT00000045139
34003288 - 34097571
94284
ENSAPLT00000029758
34003288 - 34097571
94284
ENSAPLT00000044805
34003347 - 34097571
94225
ENSAPLT00000022916
34003347 - 34097571
94225
ENSAPLT00000038640
34003347 - 34097588
94242