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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_34080319_34080651_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34080319 - 34080651
Intron Length:
333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTATCA
Flanking Amino Acid:
CTSGTLQNQEIDPSAGNSSV
Intron Amino Acid Position:
1429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
74.3
31.9
Major BPS
100
1.24
0.5
100
0
Major PPT
83
0.74
0.9
82.8
32.5
Minor 5ss
35.4
-1.7
3.3
46.2
49.1
Minor BPS
69.7
0.61
1.8
84.85
34.7

Associated Gene:

Gene:
MPDZ
Ensembl Gene ID:
ENSAPLG00000013686
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020647
34003288 - 34097571
94284
ENSAPLT00000044805
34003347 - 34097571
94225
ENSAPLT00000014337
34003347 - 34097571
94225
ENSAPLT00000034187
34003288 - 34097571
94284
ENSAPLT00000029758
34003288 - 34097571
94284
ENSAPLT00000022916
34003347 - 34097571
94225
ENSAPLT00000045139
34003288 - 34097571
94284