About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_34080319_34082663_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34080319 - 34082663
Intron Length:
2345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTTTTTCTATTT
Flanking Amino Acid:
CTSGTLQNQEDGRIKVGDQI
Intron Amino Acid Position:
1353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
74.3
31.9
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
85.8
0.8
0.8
77.4
41.2
Minor 5ss
35.4
-1.7
3.3
46.2
49.1
Minor BPS
54.8
0.23
1.9
79.65
37.1

Associated Gene:

Gene:
MPDZ
Ensembl Gene ID:
ENSAPLG00000013686
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038640
34003347 - 34097588
94242