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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_34080733_34082467_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34080733 - 34082467
Intron Length:
1735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTATTTATCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCTATTTATCC
Flanking Amino Acid:
KNIQYVELPKDQGGLGIAIS
Intron Amino Acid Position:
1456

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
80.6
31.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.5
0.62
0.9
69.9
40
Minor 5ss
41.4
-1
3.1
59
45.7
Minor BPS
58.4
0.24
1.8
70.85
40.8

Associated Gene:

Gene:
MPDZ
Ensembl Gene ID:
ENSAPLG00000013686
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022916
34003347 - 34097571
94225
ENSAPLT00000045139
34003288 - 34097571
94284
ENSAPLT00000020647
34003288 - 34097571
94284
ENSAPLT00000044805
34003347 - 34097571
94225
ENSAPLT00000014337
34003347 - 34097571
94225
ENSAPLT00000034187
34003288 - 34097571
94284
ENSAPLT00000029758
34003288 - 34097571
94284