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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_34094325_34095239_F

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34094325 - 34095239
Intron Length:
915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTAA
5'SS Class:
major
3'SS Sequence:
TTTTCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTTCTACATTT
Flanking Amino Acid:
GVAAQTQKLRVGDRIVSICG
Intron Amino Acid Position:
1876

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
73.9
32.9
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
92.8
0.96
0.6
88.9
20.3
Minor 5ss
40.8
-1
2.8
45.6
43.6
Minor BPS
49.2
0.02
2
76.99
40

Associated Gene:

Gene:
MPDZ
Ensembl Gene ID:
ENSAPLG00000013686
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020647
34003288 - 34097571
94284
ENSAPLT00000035705
34003288 - 34097571
94284
ENSAPLT00000014337
34003347 - 34097571
94225
ENSAPLT00000034187
34003288 - 34097571
94284
ENSAPLT00000045139
34003288 - 34097571
94284
ENSAPLT00000029758
34003288 - 34097571
94284
ENSAPLT00000044805
34003347 - 34097571
94225
ENSAPLT00000022916
34003347 - 34097571
94225
ENSAPLT00000038640
34003347 - 34097588
94242